PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma442g00020.1
Common NameZOSMA_442G00020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HB-other
Protein Properties Length: 158aa    MW: 18683.3 Da    PI: 8.9633
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma442g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.12.3e-1642107157
                       TT--SS--HHHHHHHHHH.........HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   1 rrkRttftkeqleeLeel.........FeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       +r+ ++++++q++ Le++         F+++  p+a++r  L kkl+++ +qVk+WFqNrR+k+k+
  Zosma442g00020.1  42 KRNYHRYNHDQIQNLEAYvgdlkphlmFKECTCPDANQRIILGKKLNMDSQQVKYWFQNRRMKMKN 107
                       67888999999999998555555555599***********************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.91E-1627108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-1837116IPR009057Homeodomain-like
PROSITE profilePS5007113.21639108IPR001356Homeobox domain
SMARTSM003891.0E-941112IPR001356Homeobox domain
PfamPF000468.2E-1442107IPR001356Homeobox domain
CDDcd000862.09E-1142108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MYSGSRLDDF DGQGHRLSRE VDTNVDQNSV VQYESMSCNE KKRNYHRYNH DQIQNLEAYV  60
GDLKPHLMFK ECTCPDANQR IILGKKLNMD SQQVKYWFQN RRMKMKNQLK NKENSVLKQQ  120
IDKLRHEKAL LIMEAMSKPC CAQCGYHPVY EKIYQKD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P3J61e-116A0A0K9P3J6_Z
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.15e-31HD-ZIP family protein